Source repo: sdsc-summer-institute-2024 | Branch:
main| Last synced: 2026-04-24 10:27:17.425 UTC
sdsc-summer-institute-2024
This repository hosts all material and slides of the presentations at the Summer Institute SDSC Summer Institute 2024 website: https://na.eventscloud.com/website/70797/
Interactive Videos
- A full catalog of all our trainings at SDSC can be found here.
Aliases, symlinks and reservations
For your convenience, we’ve create aliases and symlinks for the Summer Institute
- srun-shared - start an interactive session on a shared compute node
- srun-compute – start an interactive session on a compute node
- srun-gpu-shared – start an interactive session on one GPU
- jupyter-shared-spark – start a JupyteLab session for Spark on a shared compute node
- jupyter-compute-tensorflow – start a JupyterLab session for TensorFlow session on a compute node
- jupyter-gpu-shared-tensorflow – start a JupyterLab session for TensorFlow on one GPU
- data – symlink to staged data In the event that you need to explicitly use the reservation, training accounts will have access to SI2021RES for duration of SI
Agenda
All times are in Pacific time.
Tuesday, July 30: Virtual Prep Day
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 11:00 AM | 1.0 Preparation Day - Welcome & Orientation | Robert Sinkovits |
Monday, August 5
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Check-in & Registration | |
| 8:30 AM – 9:30 AM | Welcome | |
| 9:30 AM - 10:15 AM | 2.1 Parallel Computing Concepts | Robert Sinkovits |
| 10:15 AM – 11:00 AM | 2.2 Hardware Overview | Andreas Goetz |
| 11:00 AM - 11:15 AM | Break | |
| 11:15 AM – 12:15 PM | 2.3 Intermediate Linux | Andreas Goetz |
| 12:15 PM - 1:45 PM | Lunch | |
| 1:45 PM – 2:45 PM | 2.4 Batch Computing | Marty Kandes |
| 2:45 PM – 3:00 PM | Break | |
| 3:00 PM – 4:00 PM | 2.5 Interactive Computing | Mary Thomas |
| 4:00 PM - 4:30 PM | Q&A + Wrap-up | |
| 4:45 PM - 7:00 PM | Evening Reception - Offsite | |
| (Transportation will be provided - departure from SDSC driveway at 4:45 PM) |
Tuesday, August 6, 2024
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Check-in & Light Breakfast | |
| 8:30 AM – 9:00 AM | 3.1 Getting Help | Nicole Wolter |
| 9:00 AM – 10:00 AM | 3.2 Data Management | Marty Kandes |
| 10:00 AM – 10:15 AM | Break | |
| 10:15 AM – 11:00 AM | 3.3 Security | Scott Sakai |
| 11:00 AM – 12:00 PM | 3.4 Code Migration | Mahidhar Tatineni |
| 12:00 PM - 1:30 PM | Lunch | |
| 1:30 PM – 2:45 PM | 3.5 High Throughput Computing | Marty Kandes |
| 2:45 PM - 3:00 PM | Break | |
| 3:00 PM - 4:30 PM | 3.6 Linux Tools for File Processing | Robert Sinkovits |
| 4:30 PM | Q&A + Wrap-up |
Wednesday, August 7, 2024
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Check-in & Light Breakfast | |
| 8:30 AM – 10:00 AM | 4.1a Intro to Git & GitHub | Mahidhar Tatineni |
| 8:30 AM – 10:00 AM | 4.1b Advanced Git & GitHub | Fernando Garzon |
| 10:00 AM – 10:15 AM | Break | |
| 10:15 AM – 12:30 PM | 4.2a Python for HPC | Andrea Zonca |
| 10:15 AM – 12:30 PM | 4.2b Information Visualization Concepts | Isaac Nealey |
| 12:30 PM - 2:00 PM | Lunch | |
| 2:00 PM – 4:30 PM | 4.3a Conducting Scientific Visualization with VTK and Unreal Engine 5 | Isaac Nealey |
| 2:00 PM – 4:30 PM | 4.3b Scalable Machine Learning | Mai Nguyen |
| Paul Rodriguez | ||
| 4:30 PM | Q&A + Wrap-up |
Thursday, August 8, 2024
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Check-in & Light Breakfast | |
| 8:30 AM - 9:30 AM | 5.1 Scaling up Interactive Data Analysis in Jupyter Lab: From Laptop to HPC | Peter Rose |
| 9:30 AM – 9:45 AM | Break | |
| 9:45 AM – 12:15 PM | 5.2a Performance Tuning | Robert Sinkovits |
| 9:45 AM – 12:15 PM | 5.2b Deep Learning - Part 1 | Mai Nguyen |
| Paul Rodriguez | ||
| 12:15 PM – 1:45 PM | Lunch | |
| 1:45 PM – 4:30 PM | 5.3a GPU Computing and Programming | Andreas Goetz |
| 1:45 PM – 4:30 PM | 5.3b Deep Learning – Part 2 | Mai Nguyen |
| Paul Rodriguez | ||
| 4:30 PM | Q&A + Wrap-up & Group Photo | |
| 5:00 pm - 7:00 pm | Dinner at 15th Floor |
Friday, August 9, 2024
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Check-in & Light Breakfast | |
| 8:30 AM – 11:30 AM | 6.1a Parallel Computing using MPI & Open MP | Mahidhar Tatineni |
| 8:30 AM – 11:30 AM | 6.1b A Short Introduction to Data Science and its Applications | Subhasis Dasgupta |
| Jon Stephens | ||
| 11:30 AM – 11:45 AM | 6.2 Overview of Voyager | Amit Majumdar |
| 11:45 AM - 12:00 PM | 6.3 Overview of COSMOS | Mahidhar Tatineni |
| 12:15 PM – 12:30 PM | Closing Remarks | Robert Sinkovits |
Additional SDSC Resources
Voyager
The Voyager supercomputer is an innovative AI system designed specifically for science and engineering research at scale. Funded by the National Science Foundation, Voyager represents a collaboration with the San Diego Supercomputer Center at UC San Diego, Supermicro, and Intel’s Habana Lab focused on supporting research in science and engineering that is increasingly dependent upon artificial intelligence and deep learning as a critical element in the experimental and/or computational work.
- Voyager: Exploring Habana processor-based AI focused hardware for Science and Engineering Training Session
- Voyager User Guide HERE.
- Voyager video HERE.
CloudBank
CoudBank is a managed service to simplify cloud access for computer science research. CloudBank overview video HERE. DCL funding opportunity for PIs who have existing CISE awards, details HERE.
SeedMe
SeedMe is a scientific data management framework for teams struggling with intractable data.
SeedMeLab overview talk HERE.
License
All the teaching material in this repository is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License
If you are re-using this material, please cite our record on Zenodo