Source repo: ciml-summer-institute-2022 | Branch:
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ciml-summer-institute-2022
Website: https://na.eventscloud.com/website/35357/home/
Interactive Videos
Contents:
- Description
- Agenda
- Instructors
- All presentations are located in this repository.
Description:
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
Agenda:
All times are in Pacific time.
Preparation Day (Wednesday, 06/22/22)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 9:20 AM | 1.1 Welcome & Orientation [Interactive Video] | Mary Thomas |
| 9:20 AM – 9:50 AM | 1.2 Access, Accounts, Login, Environment, Expanse User Portal [Interactive Video] | Mary Thomas |
| 9:50 AM – 10:10 AM | 1.3 Running Jupyter Notebooks on Expanse [Interactive Video] | Marty Kandes |
| 10:10 AM – 10:30 AM | Q&A, Wrap-up | All |
HPC & Parallel Concepts (Monday, 06/27/22)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 2.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:05 AM | 2.2 Introduction HPC/Cyberinfrastructure [Interactive Video] | Robert Sinkovits |
| 9:05 AM – 10:05 AM | 2.3 CPU Computing - Hardware, Architecture, Software, Running Jobs [Interactive Video] | Mary Thomas |
| 10:05 AM – 11:35 AM | 2.4 Data Management and File Systems [Interactive Video] | Marty Kandes |
| 11:35 AM – 12:05 PM | Break/Lunch | |
| 12:05 PM – 1:50 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure [Interactive Video] | Andreas Goetz |
| 12:05 PM – 1:50 PM | Q&A, Wrap-up | All |
Scalable Machine Learning (Tuesday, 06/28/22)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 3.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:15 AM | [3.2 Introduction to Singularity: Containers for Scientific and | |
| High-Performance Computing](https://github.com/ciml-org/ciml-summer-institute-2022/tree/main/3.2_introduction_to_singularity) [Interactive Video] | Marty Kandes | |
| 9:15 AM – 11:00 AM | 3.3 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible Data Exploration and ML [Interactive Video] | Peter Rose |
| 11:00 AM – 11:30 AM | Break/ Lunch | |
| 11:30 AM – 11:45 AM | 3.4 Machine Learning (ML) Overview | |
| Session was skipped, but resources are still availabe | Mai Nguyen | |
| 11:45 AM – 12:15 PM | 3.5 R on HPC Demo [Interactive Video] | Paul Rodriguez |
| 12:15 PM – 2:15 PM | 3.6 Spark [Interactive Video] | Mai Nguyen |
Deep Learning (Wednesday, 06/29/22)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 4.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:05 AM | 4.2 Intro to NN/CNN [Interactive Video] | Paul Rodriguez |
| 9:05 AM – 10:05 AM | 4.3 Deep Learning [Interactive Video] | Paul Rodriguez |
| 10:05 AM – 10:50 AM | 4.4 Deep Learning Layers and Models [Interactive Video] | Mai Nguyen |
| 10:55 AM – 11:25 AM | Break/Lunch | |
| 11:25 AM – 12:25 PM | 4.5 Deep Learning Transfer Learning [Interactive Video] | Mai Nguyen |
| 12:25 PM – 1:25 PM | 4.6 Deep Learning – Other topics [Interactive Video] | Paul Rodriguez |
| 1:25 PM – 2:00 PM | Q&A, wrap-up |
CIML Instructors
| Name | Title | Contact |
|---|---|---|
| Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
| Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
| Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
| Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
| Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
| Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |
| Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |