Source repo: ciml-summer-institute-2024 | Branch:
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ciml-summer-institute-2024
Repository for the CIML 2024 Summer Institute training materials.
Website: https://na.eventscloud.com/website/70695/
Interactive Videos
- A full catalog of all our trainings at SDSC can be found here.
Contents:
- Description
- Agenda
- Instructors
- All presentations are located in this repository.
Description:
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
Agenda:
All times are in Pacific time.
Preparation Day (virtual) (Tuesday, 06/20/24)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 9:15 AM | 1.1 Welcome & Orientation | Mary Thomas |
| 9:15 AM – 9:45 AM | 1.2 Accounts, Login, Environment, Running Jobs and Logging into Expanse User Portal | Mary Thomas |
| 9:45 AM – 10:30 AM | Q&A, Wrap-up | All |
HPC & Parallel Concepts (Tuesday, 06/25/24)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 9:30 AM | 2.1 Welcome and Introductions | Mary Thomas |
| 9:30 AM - 10:15 AM | 2.2 Parallel Computing Concepts | Robert Sinkovits |
| 10:15 AM - 10:30 AM | Break | |
| 10:30 AM - 11: 15 AM | 2.3 Getting Started with Batch Job Scheduling | Marty Kandes |
| 11:15 AM - 12:30 PM | 2.4 Data Management and File Systems | Marty Kandes |
| 12:30 PM - 1:30 PM | Lunch | |
| 1:30 PM - 3:00 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure | Andreas Goetz |
| 3:00 PM - 3:15 PM | Break | |
| 3:15 PM - 4:45 PM | 2.6 Software Containers for Scientific and High-Performance Computing | Marty Kandes |
| 4:45 PM – 5:30 PM | Q&A, Wrap-up | All |
| 5:30 PM – 7:00 PM | Evening Reception - UC San Diego, Seventh College, 15th Floor |
Deep Learning (Wednesday, 06/26/24)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM - 8:45 AM | 3.1 Machine Learning (ML) Overview | Mai Nguyen |
| 8:45 AM - 10:15 AM | 3.2 Introduction to Neural Networks and Convolution Neural Networks | Paul Rodriguez |
| 10:15 AM - 10:30 AM | Break | |
| 10:30 AM - 12:00 PM | 3.3 Practical Guidelines for Training Deep Learning on HPC | Paul Rodriguez |
| 12:00 PM - 1:00 PM | Lunch | |
| 1:00 PM - 1:45 PM | 3.4 Deep Learning Layers and Architectures | Mai Nguyen |
| 1:45 PM - 3:15 PM | 3.5 Deep Learning Transfer Learning | Mai Nguyen |
| 3:15 PM - 3:30 PM | Break | |
| 3:30 PM - 5:00 PM | 3.6 Deep Learning – Special Connections | Paul Rodriguez |
| 5:00 PM | Q&A, Wrap-up | All |
Scalable Machine Learning & Large Language Model (Thursday, 06/27/24)
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 10:00 AM | 4.1 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible | Peter Rose Ph.D. |
| 10:00 AM – 10:15 AM | Break | |
| 10:15 AM – 10:45 AM | 4.2 R on HPC Demo | Paul Rodriguez |
| 10:45 AM - 12:15 PM | 4.3 Spark | Mai Nguyen |
| 12:15 PM - 1:15 PM | Lunch | |
| 12:30 PM – 1:15 PM | 4.4 LLM Overview | Mai Nguyen |
| 2:15 PM - 2:30 PM | Break | |
| 2:30 PM - 4:30 PM | 4.5 LLM Overview - continued | Paul Rodriguez |
| 4:30 PM – 5:00 PM | Q&A, wrap-up |
CIML Instructors
| Name | Title | |
|---|---|---|
| Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
| Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
| Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
| Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |
| Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
| Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
| Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |